The publications of ATCG group


Yue JY, Liu YS*. SSR2Marker: an integrated pipeline for identification of SSR markers within any two given genome-scale sequences. Molecular Horticulture 2:11 (2022.04.22).


Wang LJ#, Lei T#, Han GM#, Yue JY#, Zhang XR, Yang Q, Ruan HX, Gu CY, Zhang Q, Qian T, Zhang NN, Qian W, Wang Q, Pang XJ, Shu Y, Gao LP, Wang YS*. The chromosome-scale reference genome of Rubus chingii Hu provides insight into the biosynthetic pathway of hydrolysable tannins. Plant Journal 107:1466–1477 (2021.06.26).


Yue JY#, Liu JC#, Tang W, Wu YQ, Tang XF, Li W, Yang Y, Wang LH, Huang SX, Fang CB, Zhao K, Fei ZJ*, Liu YS*, Zheng Y*. Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics. Horticulture Research 7:117 (2020.08.01).

He SD#, Zhao JL#, Cao XD, Ye YK, Wu ZY, Yue JY, Yang L, Jin RS, Sun HJ*. Low pH-shifting treatment would improve functional properties of black turtle bean (Phaseolus vulgaris L.) protein isolate with immunoreactivity reduction. Food Chemistry 330:15 (2020.05.31).

Yang YF, He SD*, Ye YK, Cao XD, Liu HY, Wu ZY, Yue JY, Sun HJ. Enhanced hydrophobicity of soybean protein isolate by low-pH shifting treatment for the sub-micron gel particles preparation. Industrial Crops and Products 151:1 (2020.04.27).

Yue JY#, Wang R#, Ma XJ#, Liu JY, Lu XH, Thakar SB, An N, Liu J, Xia EH*, Liu YS*. Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis in Crocus sativus. Computational and Structural Biotechnology Journal 18:774–783 (2020.03.26).

王然, 卢晓慧, 刘永胜, 王一君*, 岳俊阳*. 不同产地番红花活性物质的代谢组学研究. 植物生理学报 56:672–680 (2020.03.10). [Wang R, Lu XH, Liu YS, Wang YJ*, Yue JY*. Metabolomics study of active substances in saffron (Crocus sativus) from different production areas. Plant Physiology Journal 56:672–680 (2020.03.10).]

Ma XJ, Thakar SB, Zhang HM, Yu ZQ, Meng L, Yue JY*. Bioinformatics analysis of the rhizosphere microbiota of Dangshan Su pear in different soil types. Current Bioinformatics 15:503–514 (2020.03.09).

Sui Y, Wisniewski M, Droby S, Piombo E, Wu XH*, Yue JY*. Genome sequence, assembly, and characterization of the antagonistic yeast Candida oleophila used as a biocontrol agent against post-harvest diseases. Frontiers in Microbiology 11:295 (2020.02.25).

Ma XJ*, Meng L, Zhang HM, Zhou LY, Yue JY, Zhu HX, Yao RS. Sophorolipid biosynthesis and production from diverse hydrophilic and hydrophobic carbon substrates. Applied Microbiology and Biotechnology 104:77–100 (2020.01.01).


Sun XB#, Ye YK#, He SD*, Wu ZY, Yue JY, Sun HJ, Cao XD*. A novel oriented antibody immobilization based voltammetric immunosensor for allergenic activity detection of lectin in kidney bean by using AuNPs-PEI-MWCNTs modified electrode. Biosensors and Bioelectronics 143:111607 (2019.10.15).

Tang W#, Sun XP#, Yue JY#, Tang XF, Jiao C, Yang Y, Niu XL, Miao M, Zhang DF, Huang SX, Shi W, Li MZ, Fang CB, Fei ZJ*, Liu YS*. Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping. GigaScience 8:giz027 (2019.04.01).

Wang LH#, Tang W#*, Hu YW, Zhang YB, Sun JQ, Guo XH, Lu H, Yang Y, Fang CB, Niu XL, Yue JY, Fei ZJ, Liu YS*. A MYB/bHLH complex regulates tissue-specific anthocyanin biosynthesis in the inner pericarp of red-centered kiwifruit Actinidia chinensis cv. Hongyang. Plant Journal 99:359–378 (2019.03.26).


Zhang DF#, Yue JY#, Hua CY, Chen DY, Han Y, Liu YS*. Role of UV-damaged DNA-binding protein-1 (DDB1) in early response to Pseudomonas syringae pv. tomato DC3000 infection in tomato. Canadian Journal of Plant Pathology 40:562–570 (2018.09.24).

Yue JY#, Zhu CX#, Zhou Y, Niu XL, Miao M, Tang XF, Chen FD, Zhao WP*, Liu YS*. Transcriptome analysis of differentially expressed unigenes involved in flavonoid biosynthesis during flower development of Chrysanthemum morifolium 'Chuju'. Scientific Reports 8:13414 (2018.09.07).

Ren YB#, Miao M#, Meng Y#, Cao JS, Fan TT, Yue JY, Xiao FM, Liu YS*, Cao SQ*. DFR1-mediated inhibition of proline degradation pathway regulates drought and freezing tolerance in Arabidopsis. Cell Reports 23:3960–3974 (2018.06.26).

卢晓慧, 朱志明, 岳俊阳*. 藏红花柱头小RNA高通量测序及生物信息学分析. 植物生理学报 54:827–836 (2018.04.26). [Lu XH, Zhu ZM, Yue JY*. Bioinformatics analysis for high-throughput sequencing of small RNAs in the stigmas of saffron (Crocus sativus). Plant Physiology Journal 54:827–836 (2018.04.26).]

Gong XP#, Zhang ZL#, Yue JY#, Tang W, Tang XF, Zeng ZM, Niu XL, Chen DY, Sang XC, Xiao FM, He GH*, Liu YS*. Phenotypic characterization, fine mapping, and altered expression profiling of roses1 mutation that affects organ size and water loss through regulating stomatal density in rice. Crop Science 58:486–506 (2018.01.12).


Yue JY#, Lu XH#, Zhang H, Ge J, Gao XL*, Liu YS*. Identification of conserved and novel microRNAs in blueberry. Frontiers in Plant Science 8:1155 (2017.06.30).

Yue JY#, Zhang DF#, Ban RJ#, Ma XJ, Chen DY, Li GW, Liu J, Wisniewski M, Droby S, Liu YS*. PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions. Database (Oxford) 2017:baw170 (2017.02.26).


卢晓慧, 聂鹏程, 岳俊阳, 王文才. 农业物联网技术与应用. 中国农业大学出版社 (2016.12.01).

Yue JY#, Xu W#, Ban RJ#, Huang SX, Miao M, Tang XF, Liu GQ, Liu YS*. PTIR: Predicted Tomato Interactome Resource. Scientific Reports 6:25047 (2016.04.28).

Tang W#, Zheng Y#, Dong J, Yu J, Yue JY, Liu FF, Guo XH, Huang SX, Wisniewski M, Sun JQ, Niu XL, Ding J, Liu J*, Fei ZJ, Liu YS*. Comprehensive transcriptome profiling reveals long noncoding RNA expression and alternative splicing regulation during fruit development and ripening in kiwifruit (Actinidia chinensis). Frontiers in Plant Science 7:335 (2016.03.29).

杨潇怡, 隋媛, 唐晓凤, 曹徐绿, 岳俊阳, 刘永胜*. ZmBK2L3在番茄果实中的特异表达及其功能研究. 合肥工业大学学报(自然科学版) 39:410–414 (2016.03.28).


Yue JY#, Liu J#, Ban RJ#, Tang W, Deng L, Fei ZJ, Liu YS*. Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics. Database (Oxford) 2015:bav113 (2015.12.09).

Yue JY#, Ma XJ#, Ban RJ#, Huang QL, Wang WJ, Liu J, Liu YS*. FR database 1.0: a resource focused on fruit development and ripening. Database (Oxford) 2015:bav002 (2015.02.27).

Zhu YY#, Huang SX#, Miao M, Tang XF, Yue JY, Wang WJ, Liu YS*. Genome-wide identification, sequence characterization, and protein-protein interaction properties of DDB1 (damaged DNA binding protein-1)-binding WD40-repeat family members in Solanum lycopersicum. Planta 241:1337–1350 (2015.02.14).

Yue JY#, Wang WJ#, Ban RJ#, Zhu YY, Liu J, Liu YS*. PAAS: Fast retrieval of plant amino acid substitutions and their effects on comparative phenomics. Plant Molecular Biology Reporter 33:748–750 (2015.01.01).


Huang SX#, Ding J#, Deng DJ#, Tang W#, Sun HH#, Liu DY#, Zhang L#, Niu XL, Zhang X, Meng M, Yu JD, Liu J, Han Y, Shi W, Zhang DF, Cao SQ, Wei ZJ, Cui YL, Xia YH, Zeng HP, Bao K, Lin L, Min Y, Zhang H, Miao M, Tang XF, Zhu YY, Sui Y, Li GW, Sun HJ, Yue JY, Sun JQ, Liu FF, Zhou LQ, Lei L, Zheng XQ, Liu M, Huang L, Song J, Xu CH, Li JW, Ye KY, Zhong SL, Lu BR, He GH, Xiao FM, Wang HL, Zheng HK*, Fei ZJ*, Liu YS*. Draft genome of the kiwifruit Actinidia chinensis. Nature Communications 4:2640 (2013.10.18).


Yue JY, Yu JC, Fang BS*. Advances in directed evolution of genetic circuits. Journal of Biotechnology 136:S41–S42 (2008.10.01).